Detailed information of SNP:
|
SNP ID:
sf0315243194(Gbrowse)
Chromosome: chr03 Position: 15243194 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1388 | 58.36% | 41.64% |
| All Indica | 777 | 53.15% | 46.85% |
| All Japonica | 493 | 75.46% | 24.54% |
| Aus | 66 | 7.58% | 92.42% |
| Indica I | 364 | 57.69% | 42.31% |
| Indica II | 209 | 48.80% | 51.20% |
| Indica Intermediate | 204 | 49.51% | 50.49% |
| Temperate Japonica | 335 | 91.64% | 8.36% |
| Tropical Japonica | 91 | 42.86% | 57.14% |
| Japonica Intermediate | 67 | 38.81% | 61.19% |
| Group VI/Aromatic | 13 | 7.69% | 92.31% |
| Intermediate | 39 | 48.72% | 51.28% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0315243194 | T->C | LOC_Os03g26704(LOC_Os03g26704.1) | Synonymous |