Detailed information of SNP:
|
SNP ID:
sf0315245081(Gbrowse)
Chromosome: chr03 Position: 15245081 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1375 | 92.87% | 7.13% |
| All Indica | 768 | 95.57% | 4.43% |
| All Japonica | 497 | 89.94% | 10.06% |
| Aus | 54 | 81.48% | 18.52% |
| Indica I | 358 | 96.09% | 3.91% |
| Indica II | 207 | 94.20% | 5.80% |
| Indica Intermediate | 203 | 96.06% | 3.94% |
| Temperate Japonica | 335 | 95.22% | 4.78% |
| Tropical Japonica | 94 | 93.62% | 6.38% |
| Japonica Intermediate | 68 | 58.82% | 41.18% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0315245081 | T->C | LOC_Os03g26704(LOC_Os03g26704.1) | INTRON |