Detailed information of SNP:
|
SNP ID:
sf0315245590(Gbrowse)
Chromosome: chr03 Position: 15245590 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1393 | 84.06% | 15.94% |
| All Indica | 792 | 86.24% | 13.76% |
| All Japonica | 484 | 84.30% | 15.70% |
| Aus | 63 | 65.08% | 34.92% |
| Indica I | 369 | 78.05% | 21.95% |
| Indica II | 212 | 91.98% | 8.02% |
| Indica Intermediate | 211 | 94.79% | 5.21% |
| Temperate Japonica | 335 | 94.63% | 5.37% |
| Tropical Japonica | 84 | 61.90% | 38.10% |
| Japonica Intermediate | 65 | 60.00% | 40.00% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 40 | 70.00% | 30.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0315245590 | G->A | LOC_Os03g26704(LOC_Os03g26704.1) | Synonymous |