Detailed information of SNP:
|
SNP ID:
sf0315246064(Gbrowse)
Chromosome: chr03 Position: 15246064 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1407 | 85.93% | 14.07% |
| All Indica | 793 | 85.88% | 14.12% |
| All Japonica | 492 | 90.24% | 9.76% |
| Aus | 67 | 65.67% | 34.33% |
| Indica I | 372 | 76.34% | 23.66% |
| Indica II | 211 | 92.89% | 7.11% |
| Indica Intermediate | 210 | 95.71% | 4.29% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 89 | 60.67% | 39.33% |
| Japonica Intermediate | 68 | 89.71% | 10.29% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 41 | 70.73% | 29.27% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0315246064 | C->T | LOC_Os03g26704(LOC_Os03g26704.1) | INTRON |