Detailed information of SNP:
|
SNP ID:
sf0315247932(Gbrowse)
Chromosome: chr03 Position: 15247932 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1410 | 95.82% | 4.18% |
| All Indica | 796 | 98.99% | 1.01% |
| All Japonica | 493 | 94.52% | 5.48% |
| Aus | 66 | 72.73% | 27.27% |
| Indica I | 374 | 99.73% | 0.27% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 209 | 97.61% | 2.39% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 90 | 74.44% | 25.56% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 41 | 90.24% | 9.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0315247932 | T->C | LOC_Os03g26704(LOC_Os03g26704.1) | INTRON |