Detailed information of SNP:
|
SNP ID:
sf0315248788(Gbrowse)
Chromosome: chr03 Position: 15248788 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1351 | 97.41% | 2.59% |
| All Indica | 782 | 97.06% | 2.94% |
| All Japonica | 491 | 99.19% | 0.81% |
| Aus | 28 | 71.43% | 28.57% |
| Indica I | 366 | 100.00% | 0.00% |
| Indica II | 213 | 95.77% | 4.23% |
| Indica Intermediate | 203 | 93.10% | 6.90% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 88 | 96.59% | 3.41% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 37 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0315248788 | C->T | INTERGENIC | None |