Detailed information of SNP:
|
SNP ID:
sf0315248904(Gbrowse)
Chromosome: chr03 Position: 15248904 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1383 | 89.08% | 10.92% |
| All Indica | 767 | 96.74% | 3.26% |
| All Japonica | 496 | 91.73% | 8.27% |
| Aus | 65 | 0.00% | 100.00% |
| Indica I | 368 | 96.20% | 3.80% |
| Indica II | 205 | 98.05% | 1.95% |
| Indica Intermediate | 194 | 96.39% | 3.61% |
| Temperate Japonica | 335 | 97.31% | 2.69% |
| Tropical Japonica | 93 | 76.34% | 23.66% |
| Japonica Intermediate | 68 | 85.29% | 14.71% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 41 | 78.05% | 21.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0315248904 | C->T | INTERGENIC | None |