Detailed information of SNP:
|
SNP ID:
sf0315252605(Gbrowse)
Chromosome: chr03 Position: 15252605 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1345 | 91.60% | 8.40% |
| All Indica | 738 | 86.45% | 13.55% |
| All Japonica | 490 | 98.37% | 1.63% |
| Aus | 65 | 95.38% | 4.62% |
| Indica I | 342 | 87.72% | 12.28% |
| Indica II | 201 | 94.53% | 5.47% |
| Indica Intermediate | 195 | 75.90% | 24.10% |
| Temperate Japonica | 333 | 99.10% | 0.90% |
| Tropical Japonica | 92 | 98.91% | 1.09% |
| Japonica Intermediate | 65 | 93.85% | 6.15% |
| Group VI/Aromatic | 11 | 90.91% | 9.09% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0315252605 | A->G | INTERGENIC | None |