Detailed information of SNP:
|
SNP ID:
sf0315255843(Gbrowse)
Chromosome: chr03 Position: 15255843 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1328 | 74.02% | 25.98% |
| All Indica | 717 | 74.90% | 25.10% |
| All Japonica | 490 | 82.86% | 17.14% |
| Aus | 66 | 3.03% | 96.97% |
| Indica I | 345 | 80.87% | 19.13% |
| Indica II | 192 | 72.92% | 27.08% |
| Indica Intermediate | 180 | 65.56% | 34.44% |
| Temperate Japonica | 334 | 94.31% | 5.69% |
| Tropical Japonica | 90 | 62.22% | 37.78% |
| Japonica Intermediate | 66 | 53.03% | 46.97% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 41 | 63.41% | 36.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0315255843 | T->C | INTERGENIC | None |