Detailed information of SNP:
|
SNP ID:
sf0315258347(Gbrowse)
Chromosome: chr03 Position: 15258347 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1373 | 95.48% | 4.52% |
| All Indica | 793 | 96.85% | 3.15% |
| All Japonica | 458 | 94.32% | 5.68% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 97.05% | 2.95% |
| Indica II | 210 | 95.71% | 4.29% |
| Indica Intermediate | 210 | 97.62% | 2.38% |
| Temperate Japonica | 324 | 97.53% | 2.47% |
| Tropical Japonica | 88 | 95.45% | 4.55% |
| Japonica Intermediate | 46 | 69.57% | 30.43% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0315258347 | T->A | INTERGENIC | None |