Detailed information of SNP:
|
SNP ID:
sf0315260119(Gbrowse)
Chromosome: chr03 Position: 15260119 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1378 | 54.14% | 45.86% |
| All Indica | 777 | 82.88% | 17.12% |
| All Japonica | 494 | 8.30% | 91.70% |
| Aus | 55 | 56.36% | 43.64% |
| Indica I | 360 | 78.06% | 21.94% |
| Indica II | 211 | 90.05% | 9.95% |
| Indica Intermediate | 206 | 83.98% | 16.02% |
| Temperate Japonica | 334 | 0.30% | 99.70% |
| Tropical Japonica | 92 | 36.96% | 63.04% |
| Japonica Intermediate | 68 | 8.82% | 91.18% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 38 | 63.16% | 36.84% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0315260119 | T->C | LOC_Os03g26750(LOC_Os03g26750.1) | INTRON |