Detailed information of SNP:
|
SNP ID:
sf0315263569(Gbrowse)
Chromosome: chr03 Position: 15263569 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1400 | 92.64% | 7.36% |
| All Indica | 786 | 88.30% | 11.70% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 61 | 90.16% | 9.84% |
| Indica I | 368 | 89.40% | 10.60% |
| Indica II | 211 | 98.10% | 1.90% |
| Indica Intermediate | 207 | 76.33% | 23.67% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0315263569 | G->A | LOC_Os03g26750(LOC_Os03g26750.1) | INTRON |