Detailed information of SNP:
|
SNP ID:
sf0315268651(Gbrowse)
Chromosome: chr03 Position: 15268651 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 85.20% | 14.80% |
| All Indica | 799 | 93.62% | 6.38% |
| All Japonica | 497 | 84.51% | 15.49% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 375 | 96.00% | 4.00% |
| Indica II | 213 | 95.31% | 4.69% |
| Indica Intermediate | 211 | 87.68% | 12.32% |
| Temperate Japonica | 335 | 95.22% | 4.78% |
| Tropical Japonica | 94 | 67.02% | 32.98% |
| Japonica Intermediate | 68 | 55.88% | 44.12% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0315268651 | T->C | INTERGENIC | None |