Detailed information of SNP:
|
SNP ID:
sf0315271355(Gbrowse)
Chromosome: chr03 Position: 15271355 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1398 | 90.99% | 9.01% |
| All Indica | 778 | 84.58% | 15.42% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 368 | 88.59% | 11.41% |
| Indica II | 205 | 77.56% | 22.44% |
| Indica Intermediate | 205 | 84.39% | 15.61% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0315271355 | G->A | INTERGENIC | None |