Detailed information of SNP:
|
SNP ID:
sf0315289009(Gbrowse)
Chromosome: chr03 Position: 15289009 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 61.26% | 38.74% |
| All Indica | 798 | 91.35% | 8.65% |
| All Japonica | 496 | 23.19% | 76.81% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 375 | 93.07% | 6.93% |
| Indica II | 213 | 93.43% | 6.57% |
| Indica Intermediate | 210 | 86.19% | 13.81% |
| Temperate Japonica | 335 | 5.97% | 94.03% |
| Tropical Japonica | 93 | 60.22% | 39.78% |
| Japonica Intermediate | 68 | 57.35% | 42.65% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0315289009 | C->T | LOC_Os03g26770(LOC_Os03g26770.1) | Non-Synonymous SNP |