Detailed information of SNP:
|
SNP ID:
sf0315304619(Gbrowse)
Chromosome: chr03 Position: 15304619 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1348 | 57.05% | 42.95% |
| All Indica | 742 | 87.87% | 12.13% |
| All Japonica | 487 | 20.33% | 79.67% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 348 | 89.37% | 10.63% |
| Indica II | 189 | 89.42% | 10.58% |
| Indica Intermediate | 205 | 83.90% | 16.10% |
| Temperate Japonica | 335 | 5.37% | 94.63% |
| Tropical Japonica | 86 | 52.33% | 47.67% |
| Japonica Intermediate | 66 | 54.55% | 45.45% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 38 | 42.11% | 57.89% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0315304619 | A->G | INTERGENIC | None |