Detailed information of SNP:
|
SNP ID:
sf0315305003(Gbrowse)
Chromosome: chr03 Position: 15305003 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1414 | 62.66% | 37.34% |
| All Indica | 794 | 91.06% | 8.94% |
| All Japonica | 497 | 26.36% | 73.64% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 374 | 92.51% | 7.49% |
| Indica II | 210 | 93.33% | 6.67% |
| Indica Intermediate | 210 | 86.19% | 13.81% |
| Temperate Japonica | 335 | 8.06% | 91.94% |
| Tropical Japonica | 94 | 60.64% | 39.36% |
| Japonica Intermediate | 68 | 69.12% | 30.88% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0315305003 | G->A | INTERGENIC | None |