Detailed information of SNP:
|
SNP ID:
sf0315308118(Gbrowse)
Chromosome: chr03 Position: 15308118 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 87.95% | 12.05% |
| All Indica | 799 | 91.99% | 8.01% |
| All Japonica | 497 | 94.77% | 5.23% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 375 | 93.87% | 6.13% |
| Indica II | 213 | 93.90% | 6.10% |
| Indica Intermediate | 211 | 86.73% | 13.27% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 74.47% | 25.53% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0315308118 | G->A | LOC_Os03g26820(LOC_Os03g26820.1) | Non-Synonymous SNP |