Detailed information of SNP:
|
SNP ID:
sf0315311090(Gbrowse)
Chromosome: chr03 Position: 15311090 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1413 | 88.04% | 11.96% |
| All Indica | 794 | 92.07% | 7.93% |
| All Japonica | 496 | 94.56% | 5.44% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 372 | 93.82% | 6.18% |
| Indica II | 212 | 94.81% | 5.19% |
| Indica Intermediate | 210 | 86.19% | 13.81% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 74.19% | 25.81% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0315311090 | C->A | INTERGENIC | None |