Detailed information of SNP:
|
SNP ID:
sf0315316935(Gbrowse)
Chromosome: chr03 Position: 15316935 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 63.14% | 36.86% |
| All Indica | 799 | 91.99% | 8.01% |
| All Japonica | 497 | 26.36% | 73.64% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 375 | 93.60% | 6.40% |
| Indica II | 213 | 93.90% | 6.10% |
| Indica Intermediate | 211 | 87.20% | 12.80% |
| Temperate Japonica | 335 | 8.96% | 91.04% |
| Tropical Japonica | 94 | 59.57% | 40.43% |
| Japonica Intermediate | 68 | 66.18% | 33.82% |
| Group VI/Aromatic | 14 | 50.00% | 50.00% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0315316935 | A->G | LOC_Os03g26850(LOC_Os03g26850.1) | Non-Synonymous SNP |