Detailed information of SNP:
|
SNP ID:
sf0315317497(Gbrowse)
Chromosome: chr03 Position: 15317497 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1411 | 58.19% | 41.81% |
| All Indica | 792 | 87.12% | 12.88% |
| All Japonica | 496 | 22.18% | 77.82% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 374 | 89.04% | 10.96% |
| Indica II | 210 | 88.57% | 11.43% |
| Indica Intermediate | 208 | 82.21% | 17.79% |
| Temperate Japonica | 335 | 5.97% | 94.03% |
| Tropical Japonica | 93 | 56.99% | 43.01% |
| Japonica Intermediate | 68 | 54.41% | 45.59% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0315317497 | G->A | LOC_Os03g26850(LOC_Os03g26850.1) | INTRON |