Detailed information of SNP:
|
SNP ID:
sf0315319418(Gbrowse)
Chromosome: chr03 Position: 15319418 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1369 | 91.09% | 8.91% |
| All Indica | 774 | 94.83% | 5.17% |
| All Japonica | 493 | 94.73% | 5.27% |
| Aus | 49 | 4.08% | 95.92% |
| Indica I | 370 | 94.32% | 5.68% |
| Indica II | 205 | 96.59% | 3.41% |
| Indica Intermediate | 199 | 93.97% | 6.03% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 91 | 75.82% | 24.18% |
| Japonica Intermediate | 67 | 98.51% | 1.49% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 39 | 79.49% | 20.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0315319418 | C->T | INTERGENIC | None |