Detailed information of SNP:
|
SNP ID:
sf0315319684(Gbrowse)
Chromosome: chr03 Position: 15319684 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1414 | 87.98% | 12.02% |
| All Indica | 795 | 91.95% | 8.05% |
| All Japonica | 497 | 94.57% | 5.43% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 373 | 93.57% | 6.43% |
| Indica II | 212 | 94.34% | 5.66% |
| Indica Intermediate | 210 | 86.67% | 13.33% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 73.40% | 26.60% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 73.17% | 26.83% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0315319684 | T->C | INTERGENIC | None |