Detailed information of SNP:
|
SNP ID:
sf0315332577(Gbrowse)
Chromosome: chr03 Position: 15332577 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 85.76% | 14.24% |
| All Indica | 799 | 91.86% | 8.14% |
| All Japonica | 497 | 90.74% | 9.26% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 375 | 93.87% | 6.13% |
| Indica II | 213 | 94.37% | 5.63% |
| Indica Intermediate | 211 | 85.78% | 14.22% |
| Temperate Japonica | 335 | 97.31% | 2.69% |
| Tropical Japonica | 94 | 73.40% | 26.60% |
| Japonica Intermediate | 68 | 82.35% | 17.65% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0315332577 | G->C | LOC_Os03g26870(LOC_Os03g26870.1) | INTRON |
| sf0315332577 | G->C | LOC_Os03g26870(LOC_Os03g26870.2) | INTRON |