Detailed information of SNP:
|
SNP ID:
sf0315335062(Gbrowse)
Chromosome: chr03 Position: 15335062 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 86.05% | 13.95% |
| All Indica | 799 | 92.24% | 7.76% |
| All Japonica | 497 | 90.74% | 9.26% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 375 | 93.87% | 6.13% |
| Indica II | 213 | 94.37% | 5.63% |
| Indica Intermediate | 211 | 87.20% | 12.80% |
| Temperate Japonica | 335 | 97.31% | 2.69% |
| Tropical Japonica | 94 | 73.40% | 26.60% |
| Japonica Intermediate | 68 | 82.35% | 17.65% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0315335062 | T->C | INTERGENIC | None |