Detailed information of SNP:
|
SNP ID:
sf0315339900(Gbrowse)
Chromosome: chr03 Position: 15339900 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 85.76% | 14.24% |
| All Indica | 799 | 93.62% | 6.38% |
| All Japonica | 497 | 85.31% | 14.69% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 375 | 93.87% | 6.13% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 88.15% | 11.85% |
| Temperate Japonica | 335 | 95.52% | 4.48% |
| Tropical Japonica | 94 | 70.21% | 29.79% |
| Japonica Intermediate | 68 | 55.88% | 44.12% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0315339900 | T->C | INTERGENIC | None |