Detailed information of SNP:
|
SNP ID:
sf0315347579(Gbrowse)
Chromosome: chr03 Position: 15347579 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1398 | 88.05% | 11.95% |
| All Indica | 788 | 95.69% | 4.31% |
| All Japonica | 493 | 86.61% | 13.39% |
| Aus | 64 | 10.94% | 89.06% |
| Indica I | 372 | 95.43% | 4.57% |
| Indica II | 212 | 98.58% | 1.42% |
| Indica Intermediate | 204 | 93.14% | 6.86% |
| Temperate Japonica | 335 | 95.52% | 4.48% |
| Tropical Japonica | 90 | 75.56% | 24.44% |
| Japonica Intermediate | 68 | 57.35% | 42.65% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 39 | 76.92% | 23.08% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0315347579 | C->T | LOC_Os03g26880(LOC_Os03g26880.1) | Non-Synonymous SNP |