Detailed information of SNP:
|
SNP ID:
sf0315348747(Gbrowse)
Chromosome: chr03 Position: 15348747 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 89.29% | 10.71% |
| All Indica | 799 | 93.62% | 6.38% |
| All Japonica | 497 | 95.17% | 4.83% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 375 | 94.13% | 5.87% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 88.15% | 11.85% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 76.60% | 23.40% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0315348747 | G->A | LOC_Os03g26880(LOC_Os03g26880.1) | Non-Synonymous SNP |