Detailed information of SNP:
|
SNP ID:
sf0315355491(Gbrowse)
Chromosome: chr03 Position: 15355491 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 74.93% | 25.07% |
| All Indica | 796 | 94.85% | 5.15% |
| All Japonica | 497 | 38.23% | 61.77% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 97.05% | 2.95% |
| Indica II | 213 | 92.49% | 7.51% |
| Indica Intermediate | 210 | 93.33% | 6.67% |
| Temperate Japonica | 335 | 17.01% | 82.99% |
| Tropical Japonica | 94 | 85.11% | 14.89% |
| Japonica Intermediate | 68 | 77.94% | 22.06% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0315355491 | A->G | LOC_Os03g26890(LOC_Os03g26890.1) | Non-Synonymous SNP |