Detailed information of SNP:
|
SNP ID:
sf0315355881(Gbrowse)
Chromosome: chr03 Position: 15355881 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1400 | 54.00% | 46.00% |
| All Indica | 782 | 84.78% | 15.22% |
| All Japonica | 495 | 13.94% | 86.06% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 364 | 82.69% | 17.31% |
| Indica II | 208 | 90.87% | 9.13% |
| Indica Intermediate | 210 | 82.38% | 17.62% |
| Temperate Japonica | 334 | 1.80% | 98.20% |
| Tropical Japonica | 94 | 55.32% | 44.68% |
| Japonica Intermediate | 67 | 16.42% | 83.58% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0315355881 | C->T | LOC_Os03g26900(LOC_Os03g26900.1) | Non-Synonymous SNP |