Detailed information of SNP:
|
SNP ID:
sf0315357982(Gbrowse)
Chromosome: chr03 Position: 15357982 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1366 | 96.05% | 3.95% |
| All Indica | 785 | 96.94% | 3.06% |
| All Japonica | 484 | 98.14% | 1.86% |
| Aus | 45 | 57.78% | 42.22% |
| Indica I | 372 | 95.97% | 4.03% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 200 | 97.00% | 3.00% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 82 | 90.24% | 9.76% |
| Japonica Intermediate | 67 | 98.51% | 1.49% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 38 | 97.37% | 2.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0315357982 | C->A | INTERGENIC | None |