Detailed information of SNP:



SNP ID: sf0315363086(Gbrowse)

Chromosome: chr03

Position: 15363086
Major allele: A

Minor allele: C

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of A(major allele)Frequency of C(minor allele)
All1417 61.47% 38.53%
All Indica798 89.47% 10.53%
All Japonica497 13.68% 86.32%
Aus66 84.85% 15.15%
Indica I375 90.40% 9.60%
Indica II213 92.96% 7.04%
Indica Intermediate210 84.29% 15.71%
Temperate Japonica335 1.49% 98.51%
Tropical Japonica94 55.32% 44.68%
Japonica Intermediate68 16.18% 83.82%
Group VI/Aromatic14 21.43% 78.57%
Intermediate42 71.43% 28.57%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0315363086 C->A INTERGENIC None