Detailed information of SNP:
|
SNP ID:
sf0315363086(Gbrowse)
Chromosome: chr03 Position: 15363086 |
Major allele:
A
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 61.47% | 38.53% |
| All Indica | 798 | 89.47% | 10.53% |
| All Japonica | 497 | 13.68% | 86.32% |
| Aus | 66 | 84.85% | 15.15% |
| Indica I | 375 | 90.40% | 9.60% |
| Indica II | 213 | 92.96% | 7.04% |
| Indica Intermediate | 210 | 84.29% | 15.71% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 55.32% | 44.68% |
| Japonica Intermediate | 68 | 16.18% | 83.82% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0315363086 | C->A | INTERGENIC | None |