Detailed information of SNP:
|
SNP ID:
sf0315365208(Gbrowse)
Chromosome: chr03 Position: 15365208 |
Major allele:
A
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 63.37% | 36.63% |
| All Indica | 799 | 93.24% | 6.76% |
| All Japonica | 497 | 23.54% | 76.46% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 375 | 93.33% | 6.67% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 87.68% | 12.32% |
| Temperate Japonica | 335 | 12.54% | 87.46% |
| Tropical Japonica | 94 | 55.32% | 44.68% |
| Japonica Intermediate | 68 | 33.82% | 66.18% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 57.50% | 42.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0315365208 | C->A | INTERGENIC | None |