Detailed information of SNP:
|
SNP ID:
sf0315366389(Gbrowse)
Chromosome: chr03 Position: 15366389 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1413 | 61.57% | 38.43% |
| All Indica | 793 | 90.79% | 9.21% |
| All Japonica | 497 | 23.14% | 76.86% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 372 | 89.25% | 10.75% |
| Indica II | 211 | 98.10% | 1.90% |
| Indica Intermediate | 210 | 86.19% | 13.81% |
| Temperate Japonica | 335 | 12.54% | 87.46% |
| Tropical Japonica | 94 | 54.26% | 45.74% |
| Japonica Intermediate | 68 | 32.35% | 67.65% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0315366389 | G->A | INTERGENIC | None |