Detailed information of SNP:



SNP ID: sf0315368234(Gbrowse)

Chromosome: chr03

Position: 15368234
Major allele: G

Minor allele: C

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of G(major allele)Frequency of C(minor allele)
All1413 67.09% 32.91%
All Indica799 94.62% 5.38%
All Japonica492 31.91% 68.09%
Aus67 0.00% 100.00%
Indica I375 93.60% 6.40%
Indica II213 98.59% 1.41%
Indica Intermediate211 92.42% 7.58%
Temperate Japonica335 16.12% 83.88%
Tropical Japonica91 59.34% 40.66%
Japonica Intermediate66 74.24% 25.76%
Group VI/Aromatic14 92.86% 7.14%
Intermediate41 53.66% 46.34%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0315368234 C->G INTERGENIC None