Detailed information of SNP:
|
SNP ID:
sf0315368234(Gbrowse)
Chromosome: chr03 Position: 15368234 |
Major allele:
G
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1413 | 67.09% | 32.91% |
| All Indica | 799 | 94.62% | 5.38% |
| All Japonica | 492 | 31.91% | 68.09% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 375 | 93.60% | 6.40% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 92.42% | 7.58% |
| Temperate Japonica | 335 | 16.12% | 83.88% |
| Tropical Japonica | 91 | 59.34% | 40.66% |
| Japonica Intermediate | 66 | 74.24% | 25.76% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 53.66% | 46.34% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0315368234 | C->G | INTERGENIC | None |