Detailed information of SNP:
|
SNP ID:
sf0315376358(Gbrowse)
Chromosome: chr03 Position: 15376358 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1413 | 57.32% | 42.68% |
| All Indica | 795 | 94.21% | 5.79% |
| All Japonica | 497 | 7.65% | 92.35% |
| Aus | 66 | 0.00% | 100.00% |
| Indica I | 373 | 96.51% | 3.49% |
| Indica II | 213 | 94.37% | 5.63% |
| Indica Intermediate | 209 | 89.95% | 10.05% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 39.36% | 60.64% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 41 | 51.22% | 48.78% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0315376358 | C->T | INTERGENIC | None |