Detailed information of SNP:
|
SNP ID:
sf0315389236(Gbrowse)
Chromosome: chr03 Position: 15389236 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 92.60% | 7.40% |
| All Indica | 799 | 95.24% | 4.76% |
| All Japonica | 497 | 88.93% | 11.07% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 375 | 93.60% | 6.40% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 93.84% | 6.16% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 59.57% | 40.43% |
| Japonica Intermediate | 68 | 82.35% | 17.65% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 85.37% | 14.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0315389236 | A->G | INTERGENIC | None |