Detailed information of SNP:
|
SNP ID:
sf0315424983(Gbrowse)
Chromosome: chr03 Position: 15424983 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1317 | 82.00% | 18.00% |
| All Indica | 710 | 67.75% | 32.25% |
| All Japonica | 486 | 99.38% | 0.62% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 345 | 72.75% | 27.25% |
| Indica II | 184 | 74.46% | 25.54% |
| Indica Intermediate | 181 | 51.38% | 48.62% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 83 | 97.59% | 2.41% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 87.50% | 12.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0315424983 | C->G | INTERGENIC | None |