Detailed information of SNP:
|
SNP ID:
sf0315443452(Gbrowse)
Chromosome: chr03 Position: 15443452 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1319 | 92.80% | 7.20% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 399 | 76.69% | 23.31% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 247 | 67.61% | 32.39% |
| Tropical Japonica | 89 | 94.38% | 5.62% |
| Japonica Intermediate | 63 | 87.30% | 12.70% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 95.00% | 5.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0315443452 | T->G | INTERGENIC | None |