Detailed information of SNP:
|
SNP ID:
sf0315451019(Gbrowse)
Chromosome: chr03 Position: 15451019 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 62.79% | 37.21% |
| All Indica | 799 | 94.87% | 5.13% |
| All Japonica | 497 | 18.71% | 81.29% |
| Aus | 67 | 13.43% | 86.57% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 213 | 94.84% | 5.16% |
| Indica Intermediate | 211 | 87.68% | 12.32% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 80.85% | 19.15% |
| Japonica Intermediate | 68 | 19.12% | 80.88% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0315451019 | A->G | INTERGENIC | None |