Detailed information of SNP:
|
SNP ID:
sf0315452863(Gbrowse)
Chromosome: chr03 Position: 15452863 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 66.17% | 33.83% |
| All Indica | 799 | 95.24% | 4.76% |
| All Japonica | 497 | 18.71% | 81.29% |
| Aus | 67 | 73.13% | 26.87% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 94.84% | 5.16% |
| Indica Intermediate | 211 | 88.63% | 11.37% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 80.85% | 19.15% |
| Japonica Intermediate | 68 | 19.12% | 80.88% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0315452863 | A->G | LOC_Os03g27003(LOC_Os03g27003.2) | Non-Synonymous SNP |
| sf0315452863 | A->G | LOC_Os03g27003(LOC_Os03g27003.1) | Non-Synonymous SNP |