Detailed information of SNP:
|
SNP ID:
sf0315484798(Gbrowse)
Chromosome: chr03 Position: 15484798 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1415 | 53.78% | 46.22% |
| All Indica | 796 | 87.06% | 12.94% |
| All Japonica | 496 | 8.67% | 91.33% |
| Aus | 67 | 4.48% | 95.52% |
| Indica I | 373 | 89.28% | 10.72% |
| Indica II | 213 | 91.55% | 8.45% |
| Indica Intermediate | 210 | 78.57% | 21.43% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 93 | 43.01% | 56.99% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0315484798 | C->T | INTERGENIC | None |