Detailed information of SNP:
|
SNP ID:
sf0315493887(Gbrowse)
Chromosome: chr03 Position: 15493887 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1379 | 85.64% | 14.36% |
| All Indica | 796 | 95.23% | 4.77% |
| All Japonica | 489 | 71.37% | 28.63% |
| Aus | 42 | 80.95% | 19.05% |
| Indica I | 375 | 97.60% | 2.40% |
| Indica II | 213 | 95.77% | 4.23% |
| Indica Intermediate | 208 | 90.38% | 9.62% |
| Temperate Japonica | 333 | 75.38% | 24.62% |
| Tropical Japonica | 92 | 75.00% | 25.00% |
| Japonica Intermediate | 64 | 45.31% | 54.69% |
| Group VI/Aromatic | 12 | 33.33% | 66.67% |
| Intermediate | 40 | 90.00% | 10.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0315493887 | T->A | INTERGENIC | None |