Detailed information of SNP:
|
SNP ID:
sf0315564691(Gbrowse)
Chromosome: chr03 Position: 15564691 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1402 | 76.53% | 23.47% |
| All Indica | 798 | 67.04% | 32.96% |
| All Japonica | 483 | 87.37% | 12.63% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 40.80% | 59.20% |
| Indica II | 213 | 95.77% | 4.23% |
| Indica Intermediate | 210 | 84.76% | 15.24% |
| Temperate Japonica | 323 | 91.95% | 8.05% |
| Tropical Japonica | 92 | 90.22% | 9.78% |
| Japonica Intermediate | 68 | 61.76% | 38.24% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 87.50% | 12.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0315564691 | A->G | INTERGENIC | None |