Detailed information of SNP:
|
SNP ID:
sf0315619810(Gbrowse)
Chromosome: chr03 Position: 15619810 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1352 | 93.86% | 6.14% |
| All Indica | 793 | 98.74% | 1.26% |
| All Japonica | 443 | 83.75% | 16.25% |
| Aus | 63 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 205 | 95.12% | 4.88% |
| Temperate Japonica | 297 | 85.19% | 14.81% |
| Tropical Japonica | 88 | 93.18% | 6.82% |
| Japonica Intermediate | 58 | 62.07% | 37.93% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 40 | 97.50% | 2.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0315619810 | A->G | LOC_Os03g27250(LOC_Os03g27250.1) | Non-Synonymous SNP |