Detailed information of SNP:
|
SNP ID:
sf0315666851(Gbrowse)
Chromosome: chr03 Position: 15666851 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1404 | 62.11% | 37.89% |
| All Indica | 787 | 93.90% | 6.10% |
| All Japonica | 494 | 15.18% | 84.82% |
| Aus | 67 | 40.30% | 59.70% |
| Indica I | 373 | 96.78% | 3.22% |
| Indica II | 209 | 95.69% | 4.31% |
| Indica Intermediate | 205 | 86.83% | 13.17% |
| Temperate Japonica | 335 | 2.39% | 97.61% |
| Tropical Japonica | 92 | 58.70% | 41.30% |
| Japonica Intermediate | 67 | 19.40% | 80.60% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0315666851 | T->C | INTERGENIC | None |