Detailed information of SNP:
|
SNP ID:
sf0315671052(Gbrowse)
Chromosome: chr03 Position: 15671052 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1415 | 96.33% | 3.67% |
| All Indica | 797 | 94.48% | 5.52% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 374 | 92.25% | 7.75% |
| Indica II | 212 | 97.17% | 2.83% |
| Indica Intermediate | 211 | 95.73% | 4.27% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 90.24% | 9.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0315671052 | T->C | INTERGENIC | None |