Detailed information of SNP:
|
SNP ID:
sf0315674058(Gbrowse)
Chromosome: chr03 Position: 15674058 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 67.16% | 32.84% |
| All Indica | 799 | 96.62% | 3.38% |
| All Japonica | 497 | 18.51% | 81.49% |
| Aus | 67 | 79.10% | 20.90% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 88.63% | 11.37% |
| Temperate Japonica | 335 | 2.09% | 97.91% |
| Tropical Japonica | 94 | 75.53% | 24.47% |
| Japonica Intermediate | 68 | 20.59% | 79.41% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0315674058 | A->T | LOC_Os03g27370(LOC_Os03g27370.1) | INTRON |