Detailed information of SNP:
|
SNP ID:
sf0315682836(Gbrowse)
Chromosome: chr03 Position: 15682836 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1294 | 97.60% | 2.40% |
| All Indica | 794 | 98.74% | 1.26% |
| All Japonica | 382 | 94.76% | 5.24% |
| Aus | 64 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 206 | 95.15% | 4.85% |
| Temperate Japonica | 243 | 95.47% | 4.53% |
| Tropical Japonica | 90 | 97.78% | 2.22% |
| Japonica Intermediate | 49 | 85.71% | 14.29% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0315682836 | G->A | INTERGENIC | None |