Detailed information of SNP:
|
SNP ID:
sf0315711772(Gbrowse)
Chromosome: chr03 Position: 15711772 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 72.78% | 27.22% |
| All Indica | 799 | 99.12% | 0.88% |
| All Japonica | 497 | 28.17% | 71.83% |
| Aus | 67 | 79.10% | 20.90% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 97.16% | 2.84% |
| Temperate Japonica | 335 | 7.76% | 92.24% |
| Tropical Japonica | 94 | 82.98% | 17.02% |
| Japonica Intermediate | 68 | 52.94% | 47.06% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 41 | 85.37% | 14.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0315711772 | A->G | INTERGENIC | None |